PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF180700010CFD_t1
Common NameTRAES_3BF180700010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 319aa    MW: 34520.9 Da    PI: 6.6443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF180700010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.6e-26162220259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v++itY  +H h+
  TRAES3BF180700010CFD_t1 162 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLVITYMADHCHP 220
                              799***********************9988***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.574156222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-26157222IPR003657WRKY domain
SuperFamilySSF1182907.72E-24159222IPR003657WRKY domain
SMARTSM007743.0E-31161221IPR003657WRKY domain
PfamPF031068.7E-22163220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCGLLLRMEH LNDWDLQAVV RSCATFSSSH HPQEEDRAGP PPGPAAAPPA DTPVKREPRD  60
VVRPASAAKD ASSLYGLEYL DLDHKPFLLS APSSQSWAAV DDRHEMMISF PAAASTSGVR  120
PRVPPGRKPG IRSSTPRPKR SKKSQLKKVV CEVPVADGGV SSDLWAWRKY GQKPIKGSPY  180
PRGYYKCSSM KGCMARKLVE RSPAKPGVLV ITYMADHCHP VPTQINALAG TTRHKTTPAD  240
GHATTPKSHG DAHEAVRCED ESNEMSSMAV DGTTEEAAGD DGGEFWPTEL DLDELLAPVD  300
GDLDHVFDED GALGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-141632221977Probable WRKY transcription factor 4
1wj2_A1e-141632221977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685130.0AK368513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566901.11e-127PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A077RT950.0A0A077RT95_WHEAT; Uncharacterized protein
STRINGBRADI2G44035.11e-126(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-38WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]